Topics
Contribution roles
Availability
Work type
Impact Indicators
0

citations

0

influential works

Show more
Productivity Indicators
0

publications

0

datasets

0

software

0

other works

Open Science Indicators
0 %

open access share

0

open access works

0

open access influential works

Career Stage Indicators
0

academic age

0

gap-adjusted academic age

+ 15 missing works
* All BIP! Scholar profile indicators are calculated based on data and processes elaborated in the Indicators page. Please read the respective descriptions carefully to learn about the proper interpretation and limitations of each indicator before using it for any purpose.

List of works



Loading publications (it may take a couple of seconds)...
113 results (4 pages)
Novel thidiazuron-derived inhibitors of cytokinin oxidase/dehydrogenase
2 D        
Nisler, J.; Kopecny, D.; Koncitikova, R.; Zatloukal, M.; Bazgier, V.; Berka, K.; Zalabak, D.; Briozz (...)
Plant Molecular Biology · 2016
Plant Virus Research Studies |         Fungal Plant Pathogen Control |         Garlic and Onion Studies |        
Dataset 2
-
Open Access
Publication
Design, synthesis and biological activities of new brassinosteroid analogues with a phenyl group in the side chain
2        
Kvasnica, M. (Miroslav); Oklešťková, J. (Jana); Bazgier, V. (Václav); Rárová, L.; Kořínková (...)
Organic & Biomolecular Chemistry · 2016
Natural product bioactivities and synthesis |         14-3-3 protein interactions |         NF-κB Signaling Pathways |        
-
Open Access
Publication
Synthesis, biological evaluation and molecular modeling of a novel series of 7-azaindole based tri-heterocyclic compounds as potent CDK2/Cyclin E inhibitors
2        
Baltus, Christine; Jorda, Radek; Marot, Christophe; Berka, Karel; Bazgier, Václav; Kryštof, Vladim (...)
European Journal of Medicinal Chemistry · 2016
Click Chemistry and Applications |         Synthesis and Characterization of Heterocyclic Compounds |         Advanced Breast Cancer Therapies |        
-
Open Access
Publication
Structural Bioinformatics Tools for Drug Design
       
Jaroslav Koča; Radka Svobodová Vařeková; Lukáš Pravda; Karel Berka; Stanislav Geidl; David Seh (...)
N/A · 2016
Genetics, Bioinformatics, and Biomedical Research |        
-
Restricted/Closed access
Publication
In silico pharmacology: Drug membrane partitioning and crossing
2        
Florent Di Meo; Gabin Fabre; Karel Berka; Tahani Ossman; Benjamin Chantemargue; Markéta Paloncýov (...)
Pharmacological Research · 2016
Lipid Membrane Structure and Behavior |         Drug Transport and Resistance Mechanisms |         Spectroscopy and Quantum Chemical Studies |        
-
Open Access
Publication
Role of Enzyme Flexibility in Ligand Access and Egress to Active Site: Bias-Exchange Metadynamics Study of 1,3,7-Trimethyluric Acid in Cytochrome P450 3A4
2        
Paloncýová, M.; Navrátilová, V.; Berka, K.; Laio, Alessandro; Otyepka, M.
Journal of Chemical Theory and Computation · 2016
Pharmacogenetics and Drug Metabolism |         Computational Drug Discovery Methods |         Receptor Mechanisms and Signaling |        
-
Restricted/Closed access
Publication
Effect of Lipid Charge on Membrane Immersion of Cytochrome P450 3A4
2        
Veronika, Navrátilová; Markéta, Paloncýová; Karel, Berka; Michal, Otyepka
The Journal of Physical Chemistry B · 2016
Pharmacogenetics and Drug Metabolism |         Computational Drug Discovery Methods |         Metabolomics and Mass Spectrometry Studies |        
-
Unknown Access
Publication
The Role of Protein-Protein and Protein-Membrane Interactions on P450 Function
3        
Scott, Emily E.; Wolf, C. Roland; Otyepka, Michal; Humphreys, Sara C.; Reed, James R.; Henderson, Co (...)
Drug Metabolism and Disposition · 2016
Pharmacogenetics and Drug Metabolism |         Drug Transport and Resistance Mechanisms |         Metabolism and Genetic Disorders |        
-
Open Access
Publication
Ion Pathways in the Na+/K+-ATPase
2        
Petra Cechová; Karel Berka; Martin Kubala
Journal of Chemical Information and Modeling · 2016
Ion Transport and Channel Regulation |         Ion channel regulation and function |         Pancreatic function and diabetes |        
-
Unknown Access
Publication
Synergism of antioxidant action of vitamins E, C and quercetin is related to formation of molecular associations in biomembranes
2        
Fabre, Gabin; Bayach, Imene; Berka, Karel; Paloncýová, Markéta; Starok, M.; Rossi, C.; Duroux, Je (...)
Chemical Communications · 2015
Vitamin C and Antioxidants Research |         Antioxidant Activity and Oxidative Stress |         Free Radicals and Antioxidants |        
-
Restricted/Closed access
Publication
2,6,9-Trisubstituted purines as CRK3 kinase inhibitors with antileishmanial activity in vitro
2        
Řezníčková, E. (Eva); Popa, A. (Alexandr); Gucký, T. (Tomáš); Zatloukal, M. (Marek); Havlíč (...)
Bioorganic & Medicinal Chemistry Letters · 2015
Research on Leishmaniasis Studies |         Insect Resistance and Genetics |         Trypanosoma species research and implications |        
-
Open Access
Publication
Chrysin, baicalein and galangin are indirect activators of the human constitutive androstane receptor (CAR)
2        
Alejandro Carazo Fernández; Tomas Smutny; Lucie Hyrsová; Karel Berka; Petr Pavek
Toxicology Letters · 2015
Flavonoids in Medical Research |         Natural product bioactivities and synthesis |         Phytochemistry and Biological Activities |        
-
Restricted/Closed access
Publication
Structural Changes in Ceramide Bilayers Rationalize Increased Permeation through Stratum Corneum Models with Shorter Acyl Tails
2        
Markéta, Paloncýová; Kateřina, Vávrová; Žofie, Sovová; Russell, DeVane; Michal, Otyepka; Kar (...)
The Journal of Physical Chemistry B · 2015
Advancements in Transdermal Drug Delivery |         Surfactants and Colloidal Systems |         Lipid Membrane Structure and Behavior |        
-
Unknown Access
Publication
Effect of Cholesterol on the Structure of Membrane-Attached Cytochrome P450 3A4
2        
Veronika Navrátilová; Markéta Paloncýová; Michaela Kajsová; Karel Berka; Michal Otyepka
Journal of Chemical Information and Modeling · 2015
Receptor Mechanisms and Signaling |         Drug Transport and Resistance Mechanisms |         Pharmacogenetics and Drug Metabolism |        
-
Unknown Access
Publication
Coarse-Grain Simulations of Skin Ceramide NS with Newly Derived Parameters Clarify Structure of Melted Phase
2        
Žofie, Sovová; Karel, Berka; Michal, Otyepka; Petr, Jurečka
The Journal of Physical Chemistry B · 2015
Lipid Membrane Structure and Behavior |         Surfactants and Colloidal Systems |         Advancements in Transdermal Drug Delivery |        
-
Unknown Access
Publication
Tools and data services registry: a community effort to document bioinformatics resources
3        
Jon C. Ison; Kristoffer Rapacki; Hervé Ménager; Matús Kalas; Emil Rydza; Piotr Chmura; Christian (...)
Nucleic Acids Research · 2015
Scientific Computing and Data Management |         Genetics, Bioinformatics, and Biomedical Research |         Research Data Management Practices |        
-
Open Access
Publication
Characterization of a Pyrazolo[4,3‐d]pyrimidine Inhibitor of Cyclin‐Dependent Kinases 2 and 5 and Aurora A With Pro‐Apoptotic and Anti‐Angiogenic Activity In Vitro
2        
Řezníčková, E. (Eva); Weitensteiner, S.; Havlíček, L. (Libor); Jorda, R. (Radek); Gucký, T. ( (...)
Chemical Biology & Drug Design · 2015
Cancer-related Molecular Pathways |         Microtubule and mitosis dynamics |         Cancer Mechanisms and Therapy |        
-
Open Access
Publication
Lipocarbazole, an efficient lipid peroxidation inhibitor anchored in the membrane
2        
Fabre, Gabin; Hänchen, A.; Calliste, Claude-Alain; Berka, Karel; Banala, S; Otyepka, Michal; Süssm (...)
Bioorganic & Medicinal Chemistry · 2015
Free Radicals and Antioxidants |         Computational Drug Discovery Methods |         Antioxidant Activity and Oxidative Stress |        
-
Restricted/Closed access
Publication
Biological activities of new monohydroxylated brassinosteroid analogues with a carboxylic group in the side chain
2        
Kvasnica, M. (Miroslav); Oklešťková, J. (Jana); Bazgier, V. (Václav); Rárová, L. (Lucie); Berk (...)
Steroids · 2014
Natural product bioactivities and synthesis |         Phytochemical Studies and Bioactivities |         Seaweed-derived Bioactive Compounds |        
-
Open Access
Publication
CYP2D6: Genetics, Pharmacology and Clinical Relevance
       
Pierre Baumann
N/A · 2014
Pharmacogenetics and Drug Metabolism |         Pharmaceutical studies and practices |        
-
Unknown Access
Publication
Photoluminescence effects of graphitic core size and surface functional groups in carbon dots: COO− induced red-shift emission
       
Hola, Katerina; Bourlinos, Athanasios B.; Kozak, Ondrej; Berka, Karel; Siskova, Karolina M.; Havrdov (...)
Carbon · 2014
Carbon and Quantum Dots Applications |         Nanocluster Synthesis and Applications |         Luminescence and Fluorescent Materials |        
-
Restricted/Closed access
Publication
Synthesis and kinase inhibitory activity of new sulfonamide derivatives of pyrazolo[4,3-e][1,2,4]triazines
2        
Mariusz Mojzych; Veronika Šubertová; Anna Bielawska; Krzysztof Bielawski; Václav Bazgier; Karel B (...)
European Journal of Medicinal Chemistry · 2014
Chronic Myeloid Leukemia Treatments |         Synthesis and Characterization of Heterocyclic Compounds |         Quinazolinone synthesis and applications |        
-
Restricted/Closed access
Publication
Benchmarking of Force Fields for Molecule–Membrane Interactions
2        
Markéta, Paloncýová; Gabin, Fabre; Russell H, DeVane; Patrick, Trouillas; Karel, Berka; Michal, O (...)
Journal of Chemical Theory and Computation · 2014
Lipid Membrane Structure and Behavior |         Protein Structure and Dynamics |         Spectroscopy and Quantum Chemical Studies |        
-
Unknown Access
Publication
Amphiphilic Drug-Like Molecules Accumulate in a Membrane below the Head Group Region
2        
Markéta, Paloncýová; Russell, DeVane; Bruce, Murch; Karel, Berka; Michal, Otyepka
The Journal of Physical Chemistry B · 2014
Lipid Membrane Structure and Behavior |         Spectroscopy and Quantum Chemical Studies |         Protein Structure and Dynamics |        
-
Unknown Access
Publication
Rationalization of Reduced Penetration of Drugs through Ceramide Gel Phase Membrane
2        
Markéta, Paloncýová; Russell H, DeVane; Bruce P, Murch; Karel, Berka; Michal, Otyepka
Langmuir · 2014
Lipid Membrane Structure and Behavior |         Surfactants and Colloidal Systems |        
-
Unknown Access
Publication
Anatomy of enzyme channels
3        
Lukás Pravda; Karel Berka; Radka Svobodová Vareková; David Sehnal; Pavel Banás; Roman A. Laskows (...)
BMC Bioinformatics · 2014
Protein Structure and Dynamics |         Ion channel regulation and function |         Mass Spectrometry Techniques and Applications |        
-
Open Access
Publication
Fluorone dyes have binding sites on both cytoplasmic and extracellular domains of Na,K-ATPase
2        
Havlíková, Marika; Huličiak, Miroslav; Bazgier, Václav; Berka, Karel; Kubala, Martin
Biochimica et Biophysica Acta (BBA) - Biomembranes · 2013
Ion Transport and Channel Regulation |         Plant Stress Responses and Tolerance |         Neonatal Health and Biochemistry |        
-
Open Access
Publication
A Novel Series of Highly Potent 2,6,9-Trisubstituted Purine Cyclin-Dependent Kinase Inhibitors
2        
Gucký, T.; Jorda, R. (Radek); Zatloukal, M.; Bazgier, V.; Berka, K.; Řezníčková, E. (Eva); Bér (...)
Journal of Medicinal Chemistry · 2013
Cancer-related Molecular Pathways |         Chronic Lymphocytic Leukemia Research |         HIV/AIDS drug development and treatment |        
-
Open Access
Publication
Lipid Bilayer Membrane Affinity Rationalizes Inhibition of Lipid Peroxidation by a Natural Lignan Antioxidant
2        
Podloucká, Pavlína; Berka, Karel; Fabre, Gabin; Paloncýová, Markéta; Duroux, Jean-Luc; Otyepka, (...)
The Journal of Physical Chemistry B · 2013
Phytochemistry and Biological Activities |         Biological Activity of Diterpenoids and Biflavonoids |         Natural product bioactivities and synthesis |        
-
Open Access
Publication
Molecular Insight into Affinities of Drugs and Their Metabolites to Lipid Bilayers
2        
Markéta, Paloncýová; Karel, Berka; Michal, Otyepka
The Journal of Physical Chemistry B · 2013
Lipid Membrane Structure and Behavior |         Analytical Chemistry and Chromatography |         Computational Drug Discovery Methods |        
-
Unknown Access
Publication

Missing works

Mapping pathogenic patterns in membrane transporters from the GLUT transporter family
N/A · 2026
2025 Ownership and Maintenance of FAIRsharing record: MolMeDB
N/A · 2025
MOLEonline
N/A · 2025
2024 Ownership and Maintenance of FAIRsharing record: ValidatorDB
N/A · 2024
ChannelsDB 2.0
N/A · 2023
Dextrans as Permeation Markers and Carriers for Oral Transmucosal Drug Delivery
N/A · 2020
Molmedb - database about interactions of molecules with membranes
N/A · 2020
Pokusnice - hub chemických pokusů
N/A · 2019
Je strojové učení budoucností teoretické chemie?
N/A · 2018
Protein structures - a challenge of data delivery, visualization and annotation
N/A · 2018
Cytochrome P450 Oxidoreductase Simulations: Cofactors Movement and Structural Changes
N/A · 2015
Effect of Membrane Composition on the Structure of Membrane-Attached Cytochrome P450 3A4
N/A · 2015
Fluorone dyes binding to extracellular and cytoplasmic domains of Na, K-ATPase
N/A · 2013
Korespondenční seminář inspirovaný chemickou tematikou (KSICHT)
N/A · 2012
Structural properties of CYP2D6: Requirements for substrates and inhibitors
N/A · N/A