Topics
Contribution roles
Availability
Work type
Impact Indicators
0

citations

0

influential works

Show more
Productivity Indicators
0

publications

0

datasets

0

software

0

other works

Open Science Indicators
0 %

open access share

0

open access works

0

open access influential works

Career Stage Indicators
0

academic age

0

gap-adjusted academic age

+ 15 missing works
* All BIP! Scholar profile indicators are calculated based on data and processes elaborated in the Indicators page. Please read the respective descriptions carefully to learn about the proper interpretation and limitations of each indicator before using it for any purpose.

List of works



Loading publications (it may take a couple of seconds)...
113 results (4 pages)
Behavior of Human Cytochromes P450 on Lipid Membranes
2        
Karel, Berka; Markéta, Paloncýová; Pavel, Anzenbacher; Michal, Otyepka
The Journal of Physical Chemistry B · 2013
Lipid Membrane Structure and Behavior |         Pharmacogenetics and Drug Metabolism |         Enzyme Catalysis and Immobilization |        
-
Unknown Access
Publication
Antiallergic Effects of Pigments Isolated from Green Sea Urchin (Strongylocentrotus droebachiensis) Shells
2        
Olga N, Pozharitskaya; Alexander N, Shikov; Marina N, Makarova; Svetlana A, Ivanova; Vera M, Kosman; (...)
Planta Medica · 2013
Bioactive Compounds and Antitumor Agents |         Echinoderm biology and ecology |         Marine Sponges and Natural Products |        
-
Unknown Access
Publication
PDBsum additions
3        
Tjaart A. P. de Beer; Karel Berka; Janet M. Thornton; Roman A. Laskowski
Nucleic Acids Research · 2013
Bioinformatics and Genomic Networks |         Genetic Associations and Epidemiology |         Protein Structure and Dynamics |        
-
Open Access
Publication
MOLE 2.0: advanced approach for analysis of biomacromolecular channels
3        
Sehnal D.; Varekova R.S.; Berka K.; Pravda L.; Navratilova V.; Banas P.; Ionescu C.-M.; Otyepka M.; (...)
Journal of Cheminformatics · 2013
Ion channel regulation and function |         RNA and protein synthesis mechanisms |         Mass Spectrometry Techniques and Applications |        
-
Open Access
Publication
Binding of quinidine radically increases the stability and decreases the flexibility of the cytochrome P450 2D6 active site
2        
Karel, Berka; Eva, Anzenbacherová; Tereza, Hendrychová; Reinhard, Lange; Vlastimil, Mašek; Pavel, (...)
Journal of Inorganic Biochemistry · 2012
Pharmacogenetics and Drug Metabolism |         Analytical Chemistry and Chromatography |         Innovative Microfluidic and Catalytic Techniques Innovation |        
-
Restricted/Closed access
Publication
Convergence of Free Energy Profile of Coumarin in Lipid Bilayer
3        
Paloncýová, Markéta; Berka, Karel; Otyepka, Michal
Journal of Chemical Theory and Computation · 2012
thermodynamics and calorimetric analyses |         Lipid Membrane Structure and Behavior |         Free Radicals and Antioxidants |        
-
Open Access
Publication
Positioning of Antioxidant Quercetin and Its Metabolites in Lipid Bilayer Membranes: Implication for Their Lipid-Peroxidation Inhibition
2        
Košinová, Pavlína; Berka, Karel; Wykes, Michael; Otyepka, Michal; Trouillas, Patrick
The Journal of Physical Chemistry B · 2012
Phytochemicals and Antioxidant Activities |         Antioxidant Activity and Oxidative Stress |         Photosynthetic Processes and Mechanisms |        
-
Unknown Access
Publication
MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels
3        
Karel Berka; Ondrej Hanák; David Sehnal; Pavel Banás; Veronika Navrátilová; Deepti Jaiswal Kundu (...)
Nucleic Acids Research · 2012
Mass Spectrometry Techniques and Applications |         RNA and protein synthesis mechanisms |         Analytical Chemistry and Chromatography |        
-
Open Access
Publication
Is There a Relationship Between the Substrate Preferences and Structural Flexibility of Cytochromes P450?
2        
Michal, Otyepka; Karel, Berka; Pavel, Anzenbacher
Current Drug Metabolism · 2012
Pharmacogenetics and Drug Metabolism |         Computational Drug Discovery Methods |         Hormonal Regulation and Hypertension |        
-
Unknown Access
Publication
Dynamics and Hydration of the Active Sites of Mammalian Cytochromes P450 Probed by Molecular Dynamics Simulations
2        
Tereza, Hendrychova; Karel, Berka; Veronika, Navratilova; Pavel, Anzenbacher; Michal, Otyepka
Current Drug Metabolism · 2012
Pharmacogenetics and Drug Metabolism |         Microbial Metabolic Engineering and Bioproduction |         Computational Drug Discovery Methods |        
-
Unknown Access
Publication
Novel Covalent Bond in Proteins: Calculations on Model Systems Question the Bond Stability
2        
Milan, Ončák; Karel, Berka; Petr, Slavíček
ChemPhysChem · 2011
Free Radicals and Antioxidants |         Biochemical Acid Research Studies |         Microbial metabolism and enzyme function |        
-
Restricted/Closed access
Publication
Membrane Position of Ibuprofen Agrees with Suggested Access Path Entrance to Cytochrome P450 2C9 Active Site
3        
Berka, Karel; Hendrychová, Tereza; Anzenbacher, Pavel; Otyepka, Michal
The Journal of Physical Chemistry A · 2011
Pharmacogenetics and Drug Metabolism |         Receptor Mechanisms and Signaling |         Analytical Chemistry and Chromatography |        
-
Open Access
Publication
Insenstivity to Close Contacts and Inability to Predict Protein Foldability
3        
Karel, Berka; Michal, Otyepka
Journal of Biomolecular Structure and Dynamics · 2011
Protein Structure and Dynamics |         Enzyme Structure and Function |         RNA and protein synthesis mechanisms |        
-
Unknown Access
Publication
On the Reliability of the AMBER Force Field and its Empirical Dispersion Contribution for the Description of Noncovalent Complexes
2        
Michal, Kolár; Karel, Berka; Petr, Jurecka; Pavel, Hobza
ChemPhysChem · 2010
Advanced Chemical Physics Studies |         Spectroscopy and Quantum Chemical Studies |         Crystallography and molecular interactions |        
-
Restricted/Closed access
Publication
Energy Matrix of Structurally Important Side-Chain/Side-Chain Interactions in Proteins
2        
Karel, Berka; Roman A, Laskowski; Pavel, Hobza; Jiří, Vondrášek
Journal of Chemical Theory and Computation · 2010
Protein Structure and Dynamics |         Enzyme Structure and Function |         RNA and protein synthesis mechanisms |        
-
Unknown Access
Publication
Analysis of Energy Stabilization inside the Hydrophobic Core of Rubredoxin
2        
Karel, Berka; Pavel, Hobza; Jirí, Vondrásek
ChemPhysChem · 2009
Advanced Chemical Physics Studies |         Spectroscopy and Quantum Chemical Studies |         Hemoglobin structure and function |        
-
Restricted/Closed access
Publication
Representative Amino Acid Side Chain Interactions in Proteins. A Comparison of Highly Accurate Correlatedab InitioQuantum Chemical and Empirical Potential Procedures
2        
Karel, Berka; Roman, Laskowski; Kevin E, Riley; Pavel, Hobza; Jiří, Vondrášek
Journal of Chemical Theory and Computation · 2009
Protein Structure and Dynamics |         Advanced Chemical Physics Studies |         Crystallography and molecular interactions |        
-
Unknown Access
Publication
Another role of proline: stabilization interactions in proteins and protein complexes concerning proline and tryptophane
2        
Lada, Biedermannova; Kevin, E Riley; Karel, Berka; Pavel, Hobza; Jiri, Vondrasek
Physical Chemistry Chemical Physics · 2008
Protein Structure and Dynamics |         Enzyme Structure and Function |         Mass Spectrometry Techniques and Applications |        
-
Unknown Access
Publication
Quantum Chemical Benchmark Energy and Geometry Database for Molecular Clusters and Complex Molecular Systems (www.begdb.com): A Users Manual and Examples
       
Jan Řezáč; Petr Jurečka; Kevin E. Riley; Jiří Černý; Haydee Valdes; Kristýna Pluháčková; (...)
Collection of Czechoslovak Chemical Communications · 2008
Advanced Chemical Physics Studies |         Catalysis and Oxidation Reactions |         Catalytic Processes in Materials Science |        
-
Open Access
Publication
The Stabilization Energy of the GLU-LYS Salt Bridge in the Protein/Water Environment: Correlated Quantum Chemical ab initio, DFT and Empirical Potential Studies
       
Jan Řezáč; Karel Berka; Dominik Horinek; Pavel Hobza; Jiří Vondrášek
Collection of Czechoslovak Chemical Communications · 2008
Protein Structure and Dynamics |         Crystallography and molecular interactions |         Molecular Sensors and Ion Detection |        
-
Unknown Access
Publication
Ligand binding to the human MT2 melatonin receptor: The role of residues in transmembrane domains 3, 6, and 7
2        
Petr, Mazna; Karel, Berka; Irena, Jelinkova; Ales, Balik; Petr, Svoboda; Veronika, Obsilova; Tomas, (...)
Biochemical and Biophysical Research Communications · 2005
Receptor Mechanisms and Signaling |         Circadian rhythm and melatonin |         Neurobiology and Insect Physiology Research |        
-
Restricted/Closed access
Publication
ERRATUM: Molecular modeling of human MT2 melatonin receptor: the role of Val204, Leu272 and Tyr298 in ligand binding
       
Petr Mazna; Veronika Obsilova; Irena Jelinkova; Ales Balik; Karel Berka; Zofie Sovova; Rüdiger Ettr (...)
Journal of Neurochemistry · 2004
Circadian rhythm and melatonin |         Neurobiology and Insect Physiology Research |         Photosynthetic Processes and Mechanisms |        
-
Restricted/Closed access
Publication
Molecular modeling of human MT2 melatonin receptor: the role of Val204, Leu272 and Tyr298 in ligand binding
2        
Petr, Mazna; Veronika, Obsilova; Irena, Jelinkova; Ales, Balik; Karel, Berka; Zofie, Sovova; Rüdige (...)
Journal of Neurochemistry · 2004
Circadian rhythm and melatonin |         Photoreceptor and optogenetics research |         Receptor Mechanisms and Signaling |        
-
Open Access
Publication

Missing works

Mapping pathogenic patterns in membrane transporters from the GLUT transporter family
N/A · 2026
2025 Ownership and Maintenance of FAIRsharing record: MolMeDB
N/A · 2025
MOLEonline
N/A · 2025
2024 Ownership and Maintenance of FAIRsharing record: ValidatorDB
N/A · 2024
ChannelsDB 2.0
N/A · 2023
Dextrans as Permeation Markers and Carriers for Oral Transmucosal Drug Delivery
N/A · 2020
Molmedb - database about interactions of molecules with membranes
N/A · 2020
Pokusnice - hub chemických pokusů
N/A · 2019
Je strojové učení budoucností teoretické chemie?
N/A · 2018
Protein structures - a challenge of data delivery, visualization and annotation
N/A · 2018
Cytochrome P450 Oxidoreductase Simulations: Cofactors Movement and Structural Changes
N/A · 2015
Effect of Membrane Composition on the Structure of Membrane-Attached Cytochrome P450 3A4
N/A · 2015
Fluorone dyes binding to extracellular and cytoplasmic domains of Na, K-ATPase
N/A · 2013
Korespondenční seminář inspirovaný chemickou tematikou (KSICHT)
N/A · 2012
Structural properties of CYP2D6: Requirements for substrates and inhibitors
N/A · N/A